OJ Break API Reference
Introduction
OJ_Break is the name of the xBio:D RESTful(-like) API service to facilitate discovery of data within the xBio:D database. The API responds exclusively in JavaScript Object Notation (JSON) and accepts only HTTP GET and POST requests indiscriminately unlike a true REST API. Built using Oracle's PL/SQL database language, the API is fast but often inflexible and inconsistent, so take note of all of the comments below.
Contents
- 1 Overview
- 2 Reference
- 2.1 Procedures
- 2.2 Data Type Glossary
Overview
All API requests must be formatted by first selecting the OJ_Break library then specifying the API method. Also, each method must include a callback argument even if a callback function is unnecessary (e.g. jQuery AJAX requests).
The format for API calls is: http://osuc.biosci.ohio-state.edu/hymDB/OJ_Break.[method]?[argument1]=[value1]&...
- Example: http://osuc.biosci.ohio-state.edu/hymDB/OJ_Break.getTaxonInfo?tnuid=5012&callback=test
- Response: test({"taxon":"Oxyscelio consobrinus","author":"(Kieffer)","status":"Subsequent name/combination","rank":"Species","valid":"Valid","fossil":"N","rel_type":"Member",...
Reference
Procedures
Taxon
getTaxonStats
Description
Get some basic taxonomic statistics for a taxon from a tnuid.
Parameters
- tnuid: number
- callback: string
Return
- taxon: string
- author: string
- stats: taxon_stats
Example
http://osuc.biosci.ohio-state.edu/hymDB/OJ_Break.getTaxonStats?tnuid=30148&callback=api
getTaxonInfo
Description
Get some basic taxonomic information for a taxon from a tnuid.
Parameters
- tnuid: number
- inst_id: number
- callback: string
Return
- taxon_extended class with below extensions
- rel_type: string
- valid_taxon: taxon_basic (only present when defined)
- parent_taxon: taxon_basic
- hier: taxon_hierarchy
- source: taxon_source
- common_names: array of common_name
- orig_desc: contrib_literature_basic (only present when defined)
- stats: taxon_info_stats
- contribs: array of contribution
Example
http://osuc.biosci.ohio-state.edu/hymDB/OJ_Break.getTaxonInfo?tnuid=30148&inst_id=0&callback=api
getTaxonHierarchy
Description
Get the taxonomic hierarachy in which a taxon is at the terminal node from a tnuid.
Parameters
- tnuid: number
- callback: string
Return
- taxon: string
- author: string
- hier: taxon_hierarchy
Example
http://osuc.biosci.ohio-state.edu/hymDB/OJ_Break.getTaxonHierarchy?tnuid=30148&callback=api
getIncludedTaxa
Description
Get the taxa that are directly included within this taxon but not synonymous with it.
Parameters
- tnuid: number
- inst_id: number
- showSyns: string
- showFossils: string
- types_only: string
- show_num_spms: boolean_flag
- callback: string
Return
- tnuid: number
- parent_tnuid: number
- includedTaxa: array of taxon_extended
Example
| Method | Return | Description |
|---|---|---|
| getTaxonSynonyms(tnuid:number, showFossils:Y|N, callback:string) | ||
| getLocalities(tnuid:number, inst_id:number, precDecimals:number, showChildren:Y|N, callback:string) | ||
| getLocalities(tnuid:number, inst_id:number, pnids:array of number, precDecimals:number, showChildren:Y|N, callback:string) | ||
| getCuids(tnuids:array of number, pnids:array of number, callback:string) | ||
| getCuids(tnuid:number, showChildren:Y|N, inst_id:number, pnids:array of number, callback:string) | ||
| getTypes(tnuid:number, showSyns:Y|N, inst_id:number, primary_only:Y|N, taxon_author_search:string, offset:number, limit:number, callback:string) | ||
| getInsts(tnuid:number, callback:string) | ||
| getTaxonLiterature(tnuid:number, showSyns:Y|N, callback:string) | ||
| getAssociations(tnuid:number, rank_grouping:string, callback:string) | ||
| getHabitats(tnuid:number, callback:string) | ||
| getTaxonImages(tnuid:number, callback:string) | ||
| getTaxonBreakdown(tnuid:number, callback:string) | ||
| getTaxonPhenology(tnuid:number, callback:string) | ||
| getTaxonNewTaxaByPub(tnuid:number, validOnly:Y|N, callback:string) | ||
| getTaxonNewTaxaByYear(tnuid:number, validOnly:Y|N, callback:string) | ||
| getTaxonStatsForYear(tnuid:number, stats_year:number, callback:string) |
Occurrence / Specimen
| Method | Return | Description |
|---|---|---|
| getSpmInfo(cuid:string, callback:string) | ||
| getSpmsInfo(cuids:array of string, callback:string) |
Locality
| Method | Return | Description |
|---|---|---|
| getLocalityInfo(locID:number, tnuid:number, inst_id:number, per_id:number, pnid:number, showChildren:Y|N, completeSpmInfo:Y|N, callback:string) |
Place / Geopolitical Entity
| Method | Return | Description |
|---|---|---|
| getPlaceInfo(place_id:number, callback:string) | ||
| getSubdivisions(place_id:number, callback:string) | ||
| getGeoTaxa(place_id:number, callback:string) | ||
| getGeoCollTrips(place_id:number, callback:string) | ||
| getGeoCollTrips2(place_id:number, callback:string) | ||
| getGeoInsts(place_id:number, callback:string) |
Literature
| Method | Return | Description |
|---|---|---|
| getLitReference(pub_id:number, callback:string) | ||
| getLitParts(pub_id:number, callback:string) | ||
| getPubTaxonCitation(pub_id:number, callback:string) | ||
| getPubAssocCitation(pub_id:number, callback:string) |
Journal
| Method | Return | Description |
|---|---|---|
| getJournalInfo(jrnl_id:number, callback:string) | ||
| getJournalPubs(jrnl_id:number, callback:string) | ||
| getJournalTaxa(jrnl_id:number, callback:string) |
Institution
| Method | Return | Description |
|---|---|---|
| getCollectionInfo(inst_id:number, callback:string) | ||
| getPrimaryTypes(inst_id:number, callback:string) | ||
| getSecondaryTypes(inst_id:number, callback:string) | ||
| getInstTaxa(inst_id:number, callback:string) | ||
| getInstCollTrips2(inst_id:number, callback:string) | ||
| getInstPubs(inst_id:number, callback:string) |
Unvouchered Record
| Method | Return | Description |
|---|---|---|
| getUnvoucheredRecord(unv_id:number, callback:string) | ||
| getUnvoucheredRecords(tnuid:number, showChildren:Y|N, pnids:array of number, callback:string) | ||
| getUnvoucheredRecords(tnuids:array of number, pnids:array of number, callback:string) | ||
| getUnvLocalityInfo(locID:number, tnuid:number, per_id:number, pnid:number, showChildren:Y|N, callback:string) |
Text Search
| Method | Return | Description |
|---|---|---|
| getSearchResults(name:string, limit:number, categoryLimit:string, callback:string) | ||
| getTaxaFromText(name:string, limit:number, nameOnly:Y|N, callback:string) | ||
| getCuidsFromText(name:string, limit:number, callback:string) | ||
| getAgentsFromText(name:string, limit:number, includeParty:Y|N, callback:string) | ||
| getInstFromText(name:string, limit:number, callback:string) | ||
| getJournalsFromText(name:string, limit:number, callback:string) | ||
| getOrgsFromText(name:string, limit:number, callback:string) | ||
| getPlacesFromText(name:string, limit:number, callback:string) | ||
| getLocalitiesFromText(name:string, limit:number, callback:string) | ||
| getCollMethodsFromText(name:string, limit:number, callback:string) |
