Difference between revisions of "Annotating Publications"

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== General Notes ==
 
== General Notes ==
 
* All annotation text must be in lowercase except for proper nouns, taxonomic names, and after certain special cases where periods are used (i.e. original descriptions of genera). The first letter of an annotation is not capitalized.
 
* All annotation text must be in lowercase except for proper nouns, taxonomic names, and after certain special cases where periods are used (i.e. original descriptions of genera). The first letter of an annotation is not capitalized.
* When a taxon name is misspelled, include only the taxonomic acts that use the misspelled name and include ''misspelling'' in the annotation text
+
* Always use the spelling as it is used in a publication with abbreviations spelled out fully (e.g. ''Tel. (A.) adenyus'' -> ''Telenomus (Aholcus) adenyus''). When a taxon name is misspelled, include only the taxonomic acts that use the misspelled name and include ''spelling error'' in the annotation text.
 
* The pages for an annotation are always listed from first (lowest) page to last (highest) page.
 
* The pages for an annotation are always listed from first (lowest) page to last (highest) page.
 
* Rank the individual acts within the annotation text according to level of importance
 
* Rank the individual acts within the annotation text according to level of importance
** ''original description'' > ''generic transfer'' > ''description'' > ''diagnosis'' > ''synonymy'' or ''jr. synonym'' > ''key to {group}'' > ''keyed'' > ''type information'' or ''lectotype designation'' > ...
+
** ''original description'' > ''generic transfer'' > ''replacement name'' > ''description'' > ''diagnosis'' > ''synonymy'' or ''jr. synonym'' > ''key to {group}'' > ''keyed'' > ''type information'' or ''lectotype designation'' > ...
 
* The page number used for an annotation is the first page on which a taxonomic act appears.
 
* The page number used for an annotation is the first page on which a taxonomic act appears.
 
** An original description begins with the header containing the newly described name of a descriptive block.
 
** An original description begins with the header containing the newly described name of a descriptive block.
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|original description of a species-group taxon
 
|original description of a species-group taxon
 
|''original description''
 
|''original description''
|
+
|Note: When using the ''original description'' annotation, the assumption is that the name is code-compliant and available.
 
|-
 
|-
 
|original description of a genus-group taxon
 
|original description of a genus-group taxon
 
|''original description. Type: {type species w/ author}, by monotypy and/or original designation or designated by {author} ({year})''
 
|''original description. Type: {type species w/ author}, by monotypy and/or original designation or designated by {author} ({year})''
|Examples: ''original description. Type: Embioctonus setiger Masner, by monotypy and original designation''; ''original description. Type: Anteris bilineata Thomson, designated by Muesebeck & Walkley (1956)''
+
|Examples: ''original description. Type: Embioctonus setiger Masner, by monotypy and original designation''; ''original description. Type: Anteris bilineata Thomson, designated by Muesebeck & Walkley (1956)''. Note: When using the ''original description'' annotation, the assumption is that the name is code-compliant and available.
 
|-
 
|-
 
|original description of a family-group taxon
 
|original description of a family-group taxon
 
|''original description''
 
|''original description''
|
+
|Note: When using the ''original description'' annotation, the assumption is that the name is code-compliant and available.
 
|-
 
|-
 
|removed from synonymy with another taxon
 
|removed from synonymy with another taxon
 
|''removed from synonymy with {taxon w/ author}''
 
|''removed from synonymy with {taxon w/ author}''
 +
|
 +
|-
 +
|subgeneric or subspecific designation
 +
|''changed to {subgeneric or subspecific} status''
 
|
 
|
 
|-
 
|-
 
|species-group taxon is transferred to another genus
 
|species-group taxon is transferred to another genus
 
|''generic transfer''
 
|''generic transfer''
 +
|
 +
|-
 +
|replacement name (nomen nova) for homonym
 +
|''replacement name for {taxon w/ author}''
 +
|
 +
|-
 +
|junior subjective synonym replaces newly recognized homonym as valid name
 +
|''senior available for {taxon w/ author}''
 +
|
 +
|-
 +
|name is recognized as a junior homonym
 +
|''recognized as junior homonym of {taxon w/ author}''
 
|
 
|
 
|-
 
|-
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|-
 
|-
 
|taxon is junior synonym of taxon (new synonyms only)
 
|taxon is junior synonym of taxon (new synonyms only)
|''junior synonym of {valid taxon}''
+
|''junior synonym of {valid taxon w/ author}''
 
|
 
|
 
|-
 
|-
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|''keyed''
 
|''keyed''
 
|
 
|
 +
|-
 +
|subsequent primary type designation
 +
|''{lectotype or neotype} designation''
 +
|If used, do not include ''type information'' annotation
 
|-
 
|-
 
|primary type of a species-group taxon is identified
 
|primary type of a species-group taxon is identified
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|primary type of a species-group taxon is lost
 
|primary type of a species-group taxon is lost
 
|''type lost''
 
|''type lost''
|
+
|If used, do not include ''type information'' annotation
 
|-
 
|-
 
|primary type of a species-group taxon is destroyed
 
|primary type of a species-group taxon is destroyed
 
|''type destroyed''
 
|''type destroyed''
 +
|If used, do not include ''type information'' annotation
 +
|-
 +
|taxon placed within higher order taxon or informal group
 +
|''placed in {taxon or informal group}''
 +
|Note: Do not included this annotation text if a subgenus is explicitly used within the taxon name (''Telenomus (Aholcus) anantes''). Examples: ''placed in Telenomus (Aholcus)'', ''placed in Trissolcus basalis species gp.'', ''placed in Baryconini'', etc.
 +
|-
 +
|new distribution record
 +
|''new distribution record for {place}''
 +
|
 +
|-
 +
|catalog of subordinate taxa for the means of presenting a list of taxa
 +
|''catalog of {qualifier}''
 +
|Catalogs are usually made of a specific scope like ''catalog of New Word species'' or ''catalog of species described by G. Mayr''.
 +
|-
 +
|taxon listed in a catalog
 +
|''listed''
 
|
 
|
 +
|-
 +
|biological association of a taxon that has not previously been identified
 +
|''host association''
 +
|Separately in the annotation spreadsheet, mark the page number and the associated taxa which are being identified for host annotating.
 +
|-
 +
|new name did not meet the criteria for availability as defined in the [http://www.nhm.ac.uk/hosted-sites/iczn/code/ ICZN].
 +
|''described as new, unavailable: {reason}''
 +
|Examples: ''described as new, unavailable: type species not specified'', ''described as new, unavailable name: type depository not specified'', etc.
 
|}
 
|}
  
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;primary type
 
;primary type
 
: The name-bearing type for a species-group taxon, which includes holotype, lectotype, neotype, and syntype.
 
: The name-bearing type for a species-group taxon, which includes holotype, lectotype, neotype, and syntype.
 +
 +
 +
== Resources ==
 +
* Annotation Template (Windows-only): [[File:Annotations.xls‎]]
 +
 +
 +
[[Category:Database Manager]]
 +
[[Category:Hymenoptera Catalog]]

Latest revision as of 16:21, 10 December 2015

Introduction

This section contains procedures and conventions used for annotating taxonomic acts within publications.


General Notes

  • All annotation text must be in lowercase except for proper nouns, taxonomic names, and after certain special cases where periods are used (i.e. original descriptions of genera). The first letter of an annotation is not capitalized.
  • Always use the spelling as it is used in a publication with abbreviations spelled out fully (e.g. Tel. (A.) adenyus -> Telenomus (Aholcus) adenyus). When a taxon name is misspelled, include only the taxonomic acts that use the misspelled name and include spelling error in the annotation text.
  • The pages for an annotation are always listed from first (lowest) page to last (highest) page.
  • Rank the individual acts within the annotation text according to level of importance
    • original description > generic transfer > replacement name > description > diagnosis > synonymy or jr. synonym > key to {group} > keyed > type information or lectotype designation > ...
  • The page number used for an annotation is the first page on which a taxonomic act appears.
    • An original description begins with the header containing the newly described name of a descriptive block.
  • For keys, every page on which a taxon is keyed is listed in the pages for an annotation.
  • If a key, catalog, revision, etc. is limited in scope by geographic region, sex of specimens, or any other faction, include the qualified terms in the annotation text.
    • Common qualified annotations are: key to the Nearctic species for males, catalog of New World genera, etc.


Annotation Text Reference

Taxonomic Act Annotation Text Comments
original description of a species-group taxon original description Note: When using the original description annotation, the assumption is that the name is code-compliant and available.
original description of a genus-group taxon original description. Type: {type species w/ author}, by monotypy and/or original designation or designated by {author} ({year}) Examples: original description. Type: Embioctonus setiger Masner, by monotypy and original designation; original description. Type: Anteris bilineata Thomson, designated by Muesebeck & Walkley (1956). Note: When using the original description annotation, the assumption is that the name is code-compliant and available.
original description of a family-group taxon original description Note: When using the original description annotation, the assumption is that the name is code-compliant and available.
removed from synonymy with another taxon removed from synonymy with {taxon w/ author}
subgeneric or subspecific designation changed to {subgeneric or subspecific} status
species-group taxon is transferred to another genus generic transfer
replacement name (nomen nova) for homonym replacement name for {taxon w/ author}
junior subjective synonym replaces newly recognized homonym as valid name senior available for {taxon w/ author}
name is recognized as a junior homonym recognized as junior homonym of {taxon w/ author}
taxon is redescribed description
taxon is diagnosed diagnosis
taxon is senior synonym of taxon (new synonyms only) synonymy
taxon is junior synonym of taxon (new synonyms only) junior synonym of {valid taxon w/ author}
key is provided for subordinate taxa key to {group} Examples: key to species, key to tribes of Madagascar, etc.
taxon is keyed keyed
subsequent primary type designation {lectotype or neotype} designation If used, do not include type information annotation
primary type of a species-group taxon is identified type information
primary type of a species-group taxon is lost type lost If used, do not include type information annotation
primary type of a species-group taxon is destroyed type destroyed If used, do not include type information annotation
taxon placed within higher order taxon or informal group placed in {taxon or informal group} Note: Do not included this annotation text if a subgenus is explicitly used within the taxon name (Telenomus (Aholcus) anantes). Examples: placed in Telenomus (Aholcus), placed in Trissolcus basalis species gp., placed in Baryconini, etc.
new distribution record new distribution record for {place}
catalog of subordinate taxa for the means of presenting a list of taxa catalog of {qualifier} Catalogs are usually made of a specific scope like catalog of New Word species or catalog of species described by G. Mayr.
taxon listed in a catalog listed
biological association of a taxon that has not previously been identified host association Separately in the annotation spreadsheet, mark the page number and the associated taxa which are being identified for host annotating.
new name did not meet the criteria for availability as defined in the ICZN. described as new, unavailable: {reason} Examples: described as new, unavailable: type species not specified, described as new, unavailable name: type depository not specified, etc.


Taxonomic Act Glossary

description
The act of describing the morphological or other salient characters of a taxon.
diagnosis
The act of defining characters that distinguishes a taxon from another taxon.
junior synonym
A taxon that is treated to be the same as another taxon in which the later taxon is older and considered to be the valid name.
primary type
The name-bearing type for a species-group taxon, which includes holotype, lectotype, neotype, and syntype.


Resources