Data Validation - Revision history

Jcora at 15:44, 10 November 2011

2011-11-10T15:44:10Z

Jcora at 15:39, 10 November 2011

2011-11-10T15:39:42Z

Jcora at 22:44, 8 November 2011

2011-11-08T22:44:57Z

Jcora at 22:43, 8 November 2011

2011-11-08T22:43:21Z

Jcora at 15:14, 21 October 2011

2011-10-21T15:14:35Z

Jcora: Protected "Data Validation" ([edit=osuc_user] (indefinite) [move=osuc_user] (indefinite) [read=osuc_user] (indefinite))

2011-10-21T15:14:07Z

Protected "Data Validation" ([edit=osuc_user] (indefinite) [move=osuc_user] (indefinite) [read=osuc_user] (indefinite))

Jcora at 14:56, 21 October 2011

2011-10-21T14:56:30Z

Jcora: Created page with "'''Introduction''' This section contains information on validating data for various bioinformatics tasks. == OSUC Database == === Invalid Locality Detection and Correction ===..."

2011-10-21T14:51:42Z

Created page with "'''Introduction''' This section contains information on validating data for various bioinformatics tasks. == OSUC Database == === Invalid Locality Detection and Correction ===..."

New page

'''Introduction'''

This section contains information on validating data for various bioinformatics tasks.

== OSUC Database ==
=== Invalid Locality Detection and Correction ===
Using the ''Data_Validator'' package, run the ''listInvalidLocalities'' procedure to correct locality coordinates for localities within US states and list invalid coordinates for countries.

US State-level locality correction begins by gathering all of the localities within each US state that is absent of coordinates. After gathering the offending localities, the midpoint coordinate for the state is obtained from [http://www.geonames.org/ geonames] and set to all of the localities within that state without coordinates.

Country-level invalid locality detection is accomplished by obtaining the bounding box region of a particular country from [http://www.geonames.org/ geonames] then gathering all of the localities within that country. When a coordinate for a locality is beyond the bounding box region of a country, the locality name is displayed for manual correction.

Click [[Invalid Locality Detection and Correction Schedule|here]] for a schedule of past and future runs of invalid locality detection and correction.

[[Category:OSUC Private]]
[[Category:Data Validation]]

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 === OSUC Specimen Data Verification ===
 Using the ''Data_Validator'' package, run the ''listCollectionComposition'' procedure to get a breakdown of the composition of the number of specimens within the collection by order. The composition will dictate how many specimens for each order will be verified. After determining the number of specimens needed for an order, run the ''listRandomSpecimens'' procedure within the ''Data_Validator'' package to generate a random list of specimens from that order. Go to the taxon in which the specimen was identified, then randomly select a unit tray and specimen within the unit tray for the taxon. The specimen selected for random checking will probably not be the specimen generated from the database. Note: do not arbitrarily select, but rather randomly select a unit tray and specimen.
 Go to the [[OSUC Specimen Data Verification Schedule|schedule of past and future runs of OSUC specimen data verification]].

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 === OSUC Specimen Data Verification ===
-Using the ''Data_Validator'' package, run the ''listCollectionComposition'' procedure to get a breakdown of the composition of the number of specimens within the collection by order. The composition will dictate how many specimens for each order will be verified. After determining the number of specimens needed for an order, randomly select a cabinet within the order, randomly select a drawer within the cabinet, randomly select a unit tray within the drawer, and finally randomly select a specimen within the unit tray. After that specimen is checked, repeat the entire process from selection of cabinet to specimen. Note: do not arbitrarily select, but rather randomly select.
+Using the ''Data_Validator'' package, run the ''listCollectionComposition'' procedure to get a breakdown of the composition of the number of specimens within the collection by order. The composition will dictate how many specimens for each order will be verified. After determining the number of specimens needed for an order, run the ''listRandomSpecimens'' procedure within the ''Data_Validator'' package to generate a random list of specimens from that order. Go to the taxon in which the specimen was identified, then randomly select a unit tray and specimen within the unit tray for the taxon. The specimen selected for random checking will probably not be the specimen generated from the database. Note: do not arbitrarily select, but rather randomly select a unit tray and specimen.
 Go to the [[OSUC Specimen Data Verification Schedule|schedule of past and future runs of OSUC specimen data verification]].

@@ Line 14: / Line 14: @@
 Country-level invalid locality detection is accomplished by obtaining the bounding box region of a particular country from [http://www.geonames.org/ geonames] then gathering all of the localities within that country. When a coordinate for a locality is beyond the bounding box region of a country, the locality name is displayed for manual correction.
-Click [[Invalid Locality Detection and Correction Schedule|here]] for a schedule of past and future runs of invalid locality detection and correction.
+Go to the [[Invalid Locality Detection and Correction Schedule|schedule of past and future runs of invalid locality detection and correction]].
 === OSUC Specimen Data Verification ===
 Using the ''Data_Validator'' package, run the ''listCollectionComposition'' procedure to get a breakdown of the composition of the number of specimens within the collection by order. The composition will dictate how many specimens for each order will be verified. After determining the number of specimens needed for an order, randomly select a cabinet within the order, randomly select a drawer within the cabinet, randomly select a unit tray within the drawer, and finally randomly select a specimen within the unit tray. After that specimen is checked, repeat the entire process from selection of cabinet to specimen. Note: do not arbitrarily select, but rather randomly select.
-Click [[OSUC Specimen Data Verification Schedule|here]] for a schedule of past and future runs of OSUC specimen data verification.
+Go to the [[OSUC Specimen Data Verification Schedule|schedule of past and future runs of OSUC specimen data verification]].
 [[Category:OSUC Private]]
 [[Category:Data Validation]]

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	'''Introduction'''		'''Introduction'''

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	This section contains information on validating data for various bioinformatics tasks.		This section contains information on validating data for various bioinformatics tasks.
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	== OSUC Database ==		== OSUC Database ==

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